Abdullah Al Nahid
Open main menu
Publications
Projects
Media
PerturbVI
A Python library for inferring gene regulatory programs and perturbation effects from single-cell Perturb-seq data
LIBRARY
Links
https://github.com/mancusolab/perturbvi
https://pypi.org/project/perturbvi/
https://mancusolab.github.io/perturbvi
easylift
An R/Bioconductor library to perform genomic liftover
LIBRARY
Links
https://github.com/nahid18/easylift
https://doi.org/doi:10.18129/B9.bioc.easylift
traceax
A Python library to perform stochastic trace estimation using JAX
LIBRARY
Links
https://github.com/mancusolab/traceax
https://pypi.org/project/traceax
isoComp
A python package to compare isoform composition between cohorts using high-quality long-read RNA-seq
LIBRARY
Links
https://dub.sh/isocomp
VirusTaxo
ML web app to run to predict the taxonomy of a virus from its genome
TOOL
Links
https://github.com/nahid18/virustaxo-wf
Chatbot UI
An open source ChatGPT UI tool with <span class="font-bold">17,200+ GitHub stars</span>
OPEN SOURCE CONTRIBUTION
Links
https://github.com/mckaywrigley/chatbot-ui
https://github.com/mckaywrigley/chatbot-ui/pull/195